Timeline


and .

01/07/09: Today

09:13 Ticket #183 (join extracted regions) created by mturk
One should be able to take two ExtractedRegion? objects and join them.
07:04 Ticket #182 (add caching for clump finding) created by mturk
as seen in r1080 we can now cache ghost zones; this should be done in …

01/06/09: Yesterday

23:42 Ticket #181 (Documentation about running jobs in parallel) created by mturk
How to run jobs in parallel and how to install mpi4py need to be …
23:42 Ticket #172 (Installation script should suppress stdout and put into a log file) closed by mturk
fixed: Tested in a couple other places, including Kraken, and works just peachy. …
23:41 Changeset [1081] by mturk
New version of the install script, with output directed to a log file, …
22:06 Ticket #180 (Means of differentiating between OrionStaticOutput and EnzoStaticOutput) created by mturk
Should be able to feed some kind of path to a function, say, …
21:38 Ticket #169 (improve object serialization) closed by mturk
fixed: merged to trunk needs to have some error checking for parameter file …
21:33 Changeset [1080] by mturk
Adding cache=True option to extract_connected_sets. This'll cache ghost …
20:49 Changeset [1079] by mturk
Merging object serialization back into trunk/ (it seems to work; hopefully …
20:40 Changeset [1078] by mturk
Merging bug fixes back from trunk
18:45 Changeset [1077] by mturk
Minor fix to the contouring routine, because we need not demand our arrays …
10:30 Changeset [1076] by mturk
Corrected typo; we check the field_list in the global hierarchy, not the …
10:21 Changeset [1075] by mturk
Changed to use smoothed covering grid for constructed root grid, changed …
10:12 Changeset [1074] by mturk
A simple new black-to-green colormap.
09:13 Changeset [1073] by mturk
Speed up unpickling of extracted regions *considerably*. Slowed down …

01/05/09:

23:00 Changeset [1072] by mturk
Changed all our pickles to protocol -1, which should improve efficiency …
14:39 Changeset [1071] by britton
Fixed bug in light cone generator where line of sight field cuts from all …
13:10 Changeset [1070] by mturk
Fixed output to look nice and to have columns match up with column headers
10:15 Changeset [1069] by mturk
Fixed the metaclass in the callbacks, removed the need for an axis …

01/04/09:

23:22 Changeset [1068] by mturk
Adding the make_svn_version command so that we can get this information …
13:27 Changeset [1067] by britton
Added option to run halo profiler over a single halo located at the …

01/03/09:

19:50 Ticket #178 (Projection artifacts) closed by mturk
fixed: verified fixed with r1065
16:24 Changeset [1066] by mturk
Added get_size method to preserve compatibility with the new hop

01/01/09:

16:03 Ticket #179 (Multi-page PDF using MPL backend) created by mturk
Use this: …
15:41 Changeset [1065] by mturk
Added back in factor of 0.5 in the get_cut_mask, and changed …
14:45 Changeset [1064] by sskory
added padding as an input to the parallel halo finder.
14:00 Ticket #178 (Projection artifacts) reopened by mturk

12/31/08:

18:49 Changeset [1063] by sskory
Adding the overdensity threshold adjustment paramater for parallel hop.

12/30/08:

06:31 Changeset [1062] by mturk
Merge from trunk down to object-serialization

12/29/08:

20:39 Changeset [1061] by mturk
Updates to the parameter file db for some only_on_root calls, …
10:50 Changeset [1060] by britton
Re-added the dx's to _get_cut_mask in AMRRegionBase and removed the = from …

12/28/08:

22:47 Ticket #110 (Inline logical operations for data inclusion in profile objects) closed by mturk
fixed: This can be done with data_object.cut_region, as committed in and describe …
22:46 Changeset [1059] by mturk
Added an InLineExtractedRegionBase?, to allow for eval'd field cuts for …
22:29 Ticket #174 (Grid Boundary Callback and periodic boundary conditions are not friends) closed by mturk
fixed: closed in r1058
22:28 Changeset [1058] by mturk
GridBoundaryCallback? should now work with periodic boundary conditions. …
17:49 Ticket #178 (Projection artifacts) closed by mturk
fixed: fixed with non-inclusive cuts; britton and i have been going back and …
11:10 Changeset [1057] by mturk
Change the way we iterate, so that any procs with no halos don't get …
06:03 Changeset [1056] by mturk
Changing so that AMRRegion selects cells whose center is inside, rather …
05:33 Ticket #178 (Projection artifacts) created by mturk
Some people have reported projection artifacts in parallel. I wonder if …

12/27/08:

22:04 Changeset [1055] by mturk
Added --paste as a general command line option. Any traceback will be …
21:15 Changeset [1054] by mturk
New script, very slightly modified from the pocoo script, to use the …
10:06 Changeset [1053] by mturk
Added pre-caching of particle attributes, to avoid having to grab them …
10:01 Changeset [1052] by sskory
fixing HopCircleCallback? to reflect changes for parallel-hop
09:48 Ticket #177 (In parallel, sometimes one node gets delayed for some reason) created by mturk
Not sure where this problem lies, but Britton reported it too, and I see …
09:24 Changeset [1051] by mturk
Added a sort step to the halo joining
09:00 Ticket #176 (Deeply nested AMR projection doesn't work in parallel) closed by mturk
invalid: It turns out this is actually related to a change in the MPI4Py API in …
08:33 Changeset [1050] by mturk
Parse out the "--parallel" if running in parallel.
08:33 Ticket #176 (Deeply nested AMR projection doesn't work in parallel) created by mturk
Not entirely sure why this is, but it crashes during one of the MPI calls
08:09 Changeset [1049] by mturk
Ooops, get rid of old 'yt' script
08:08 Changeset [1048] by mturk
Rewrote the commands to run using cmdln, an amazing little module from …
07:25 Changeset [1047] by mturk
Sub-calls to methods were getting handled as proxy calls, so added a state …

12/26/08:

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08:13 Changeset [1046] by mturk
I'm sick of keeping track of the callbacks, so we're going to use a …
07:48 Changeset [1045] by mturk
Fixed some (grid.id-1) -> (grid.id-grid._id_offset) problems. Sped up …
07:10 Changeset [1044] by mturk
Unfortunately, multiple writes by different processes in a shelf don't …

12/25/08:

19:45 Changeset [1043] by mturk
Changing the default name of the .yt file: any NEW .yt files will be named …
18:56 Changeset [1042] by mturk
Added a left_collect option to profiles, to allow for including values …
18:44 Ticket #106 (Thin slab projections in reason) closed by mturk
wontfix: I think this is just not a priority. I'm not going to implement it, but …
18:21 Changeset [1041] by mturk
Clumps now have a reduce and _reconstruct pair, so they can be …
09:38 Ticket #68 (Traits should be used in Raven) closed by mturk
wontfix: Matplotlib has removed traits.
09:26 Ticket #133 (slices should respect source=) closed by mturk
fixed: Closed in r1040.
09:26 Changeset [1040] by mturk
Adding source= option to slices. Closed #133. Also, changed name of …

12/24/08:

20:52 Ticket #137 (VOBOZ) closed by mturk
wontfix: With parallel hop, this has become less important, and will not be …
20:50 Changeset [1039] by mturk
Refactoring out the classobj into _add_object_class. This will ultimately …
20:06 Changeset [1038] by mturk
Adding convenience functions, starting with iterators to find the …
13:54 Changeset [1037] by mturk
* Added tests for the pickling of objects. * Changed the …
11:02 Changeset [1036] by mturk
Adding object serialization: some_object.save_object(object_name) will …
06:09 Changeset [1035] by mturk
HOP in parallel now works except that I get a segfault on exit. I am …

12/23/08:

22:30 Changeset [1034] by mturk
Generalized reduce, added extracted_region as a class type to the …
21:59 Changeset [1033] by mturk
Changed import location in the ParameterFileStorage? object, added empty …
21:24 Changeset [1032] by mturk
Adding _cudaIsBound to DerivedQuantities?. If it's able to import pycuda …
21:10 Changeset [1031] by mturk
Expanding parameter file storage, experimenting with auto-registration …
19:51 Changeset [1030] by mturk
Parameter file storage now sort of works, set up row factories, added a …
15:57 Changeset [1029] by mturk
Adding a non-functional SQLite backend for parameter file storage and also …
15:50 Changeset [1028] by mturk
Branching to work on object serialization, including picklers and …

12/19/08:

09:43 Changeset [1027] by mturk
Changed the proxy function to work, and to demand that _distributed and …

12/18/08:

21:28 Changeset [1026] by mturk
Lots of modifications to SS_HopOutput; almost ready now to test and run. …
15:59 Changeset [1025] by britton
Fixed it so the mkdir process is only performed by the root grid to avoid …

12/17/08:

14:51 Changeset [1024] by mturk
A fix for deserialization in parallel.
12:37 Changeset [1023] by britton
Fixed hubble constant variable name.
12:26 Changeset [1022] by britton
Changed Overdensity field to use Dark_Matter_Density instead of …
11:05 Changeset [1021] by mturk
Some minor reformatting of text, added cross-links for the documentation, …
11:03 Changeset [1020] by mturk
Backporting r1019 from trunk.

12/16/08:

18:56 Changeset [1019] by mturk
I hope you're happy, Sam
16:46 Changeset [1018] by britton
Changed sample script and parameter file to match changes in the light …
16:41 Changeset [1017] by britton
Changed serialization of projection objects for the light cone. …
16:32 Changeset [1016] by britton
Fixed Serialization of projection objects when node_name is given in …
11:34 Changeset [1015] by joishi
made ability to load arbitrary fields from data files generic (not just …
11:10 Ticket #175 (Get rid of setuptools) created by mturk
We don't need setuptools anymore. The entry_points can be accomplished …
10:08 Changeset [1014] by mturk
Added a few things to the Clump setup. There's now a "ClumpStorage?" …
09:37 Changeset [1013] by mturk
Fixed some reshapings in the 'x', 'y', 'z' fields. Refactored a bit of …
08:33 Changeset [1012] by mturk
Fixed a syntax error in SS's hop code.
08:32 Changeset [1011] by mturk
Fixed a sentence, but not re-generating docs until a bit more is done.

12/15/08:

15:00 Changeset [1010] by britton
Added factor of h2 to over density field. This was missing from …

12/14/08:

23:11 Changeset [1009] by mturk
I got sick of adding new attributes manually, so all interactivity is now …

12/13/08:

19:31 Changeset [1008] by mturk
New build of the documentation with the tour.
19:29 Changeset [1007] by mturk
Deleted the old tutorial and parallel analysis section, added a new 'tour' …

12/11/08:

18:11 Changeset [1006] by mturk
A fix for the MPL bbox bounds issue using compatibility layer for 0.98 & …
17:16 Changeset [1005] by mturk
Changed to require 0.98.3 until 0.98.4 egg problems are fixed
15:48 Changeset [1004] by sskory
Forgot the padding.
15:25 Changeset [1003] by sskory
Adding a temporary HopOutput? file with my ideas on how to do the parallel …

12/10/08:

07:49 Changeset [1002] by mturk
Quick fix for node_name initialization

12/09/08:

21:08 Ticket #174 (Grid Boundary Callback and periodic boundary conditions are not friends) created by mturk
The Grid Boundary Callback seems to get confused with periodic conditions, …
20:41 Changeset [1001] by britton
If node_name is given to a projection, serialization will always happen …
20:26 Changeset [1000] by mturk
Adding yt_hop as a command -- this will go away rather soon, though, when …
20:24 Changeset [999] by mturk
Added an ArrowCallback?, fixed some problems with the MPL 0.98 & 0.91 …
20:23 Changeset [998] by mturk
Added a show_velocity() function, which I might remove later. Fixed some …
15:24 Changeset [997] by joishi
added support for older Orion data files in which the fields might be …
15:22 Changeset [996] by joishi
* corrected a bug in detecting a _read_exception
15:10 Changeset [995] by mturk
Fixed name problem
15:02 Changeset [994] by mturk
Fixing my bad code.
14:37 Changeset [993] by mturk
Quickie to make printing a traceback better and more seamless
13:24 Changeset [992] by mturk
Added a new decorator, @rootonly -- but it discards retval.
07:22 Changeset [991] by mturk
Fixing serialization of projections with field cuts
07:20 Changeset [990] by mturk
Added back in the force keyword to _serialize

12/08/08:

21:26 Changeset [989] by britton
Changed antialias to False in fixed resolution buffer.
21:24 Changeset [988] by britton
Cleaned up remnants of old solution to depth problem.
21:12 Changeset [987] by britton
Added halo mask generator to cut out circles centered on halos with radius …
21:04 Changeset [986] by britton
Halo profiler will now automatically run profiles for calculating virial …
21:01 Changeset [985] by britton
Added definition of the current critical density for use with the …
21:00 Changeset [984] by britton
Changed field cuts so that "grid" is no longer prepended to field cuts …
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